Home RNA in sperm protamines nuclear matrix bioinformatics SAK publications Journal Clublinks

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Date	Presenter	Paper
Jan 13	Graham	Determination of the in vivo structural DNA loop organization in the genomic region of the rat albumin locus by means of a topological approach
Jan 20	Fred	Genome-wide profiling of salt fractions maps physical properties of chromatin
Jan 27	Rich	Paternal Control of Embryonic Patterning in Arabidopsis thaliana
Feb 17	Claudia	Nucleosomes are preferentially positioned at exons in somatic and sperm cells
Feb 24	Fred	H2A.Z-Containing Nucleosomes Mediate the Thermosensory Response in Arabidopsis
March 03	Edward	Variability in gene expression underlies incomplete penetrance
March 10	Graham	RNF8-Dependent Histone Modifications Regulate Nucleosome Removal during Spermatogenesis
March 24	Shihong	IntOGen: integration and data mining of multidimensional oncogenomic data
March 31	Claudia	MicroRNA Activity Is Suppressed in Mouse Oocytes AND MicroRNA Function Is Globally Suppressed in Mouse Oocytes and Early Embryos
April 7	Dr Ruden	The Nuclear DNA Base 5-Hydroxymethylcytosine Is Present in Purkinje Neurons and the Brain AND Conversion of 5-Methylcytosine to 5-Hydroxymethylcytosine in Mammalian DNA by MLL Partner TET1
April 14	Tung * Shihong	INTRODUCING THE WINDOWS AZURE PLATFORM Local DNA Topography Correlates with Functional Noncoding Regions of the Human Genome
April 21	Luan *	A Drosophila Model of Friedreich's Ataxia and Autophagic Heart Disease
April 28	Graham	Chromatin signature of embryonic pluripotency is established during genome activation
May 05	Shihong	Analyzing ’omics data using hierarchical models
May 12	Graham	Heritable Individual-Specific and Allele-Specific Chromatin Signatures in Humans
May 19	Nancy *	Hsp90 prevents phenotypic variation by suppressing the mutagenic activity of transposons
May 26	Edward	RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
June 02	Luan *	Limitations in a frataxin knockdown cell model for Friedreich ataxia in a high-throughput drug screen
June 09	Graham	Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa
June 16	Steve	Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis
June 23	Aletheia	The miR-124-Sox9 paramutation: RNA-mediated epigenetic control of embryonic and adult growth
June 30	Gram	Epigenetics as a unifying principle in the aetiology of complex traits and diseases
July 07	Adele	Comparative transcriptomics of Arabidopsis sperm cells
July 14	Luan *	Direct detection of DNA methylation during single-molecule, real-time sequencing
July 21	Edward	PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice
Aug 04	Graham	Short RNAs Are Transcribed from Repressed Polycomb Target Genes and Interact with Polycomb Repressive Complex-2
Aug 11	Nancy *	Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
Aug 18	Adele	Ontological evaluation of transcriptional differences between sperm of infertile males and fertile donors using microarray analysis.
Aug 25	Edward	The MicroArray Quality Control (MAQC)-IIII study of common practices for the development and validation of microarray-based predictive models
Sept 01	Shihong	Discovery and characterization of chromatin states for systematic annotation of the human genome
Sept 15	Luan *	A Drosophila Chromatin Factor Interacts With the piRNA Mechanism in Niche Cells to Regulate Germline Stem Cell Self-renewal
Sept 29	Graham	PTIP Promotes Chromatin Changes Critical for Immunoglobulin Class Switch Recombination
Oct 06	Aletheia	Role of translation by mitochondrial-type ribosomes during sperm capacitation: An analysis based on a proteomic approach
Nov 10	Graham	Non-invasive imaging of human embryos before embryonic genome activation predicts development to the blastocyst stage
Dec 01	Graham	Quantitative analysis of the transcription control mechanism
Dec 08	Edward	Biases in Illumina transcriptome sequencing caused by random hexamer priming AND Modeling non-uniformity in short-read rates in RNA-Seq data
Dec 15	Luan *	Drosophila Piwi Functions in Hsp90-Mediated Suppression of Phenotypic Variation
Dec 22	Daniel	Epigenetic Reprogramming in Plant and Animal Development

*: from Dr Ruden's lab